PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0460.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Dof
Protein Properties Length: 264aa    MW: 28313.9 Da    PI: 9.0057
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0460.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof383.5e-125283861
                  zf-Dof 38 ryWtkGGalrnvPvGggrrknkks 61
                            ryWt GG++rnvPvGgg+rk k+ 
  SapurV1A.0012s0460.2.p  5 RYWTLGGTMRNVPVGGGCRKGKRP 28
                            9*******************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-5227IPR003851Zinc finger, Dof-type
PfamPF027015.4E-7527IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSSLRYWTLG GTMRNVPVGG GCRKGKRPKT SSSSSSGENS LLQQQPQLLQ HNLATPQNIL  60
ATTNSGNSLS PPMRTKESGN LVSPPPGMSS MGSYFPGDGF LTSLEAIQSL KNSQPPLQSF  120
SFQPLNQPVN LGGDLGDTSN LGLLHGFSAV PAFGSQNQQQ RQFYHADNRD NKSVEHSFYP  180
QYDQERLIQS SRPAATSSHQ QQNWHQGYIS NSNPTVSDTV LWSISTSTTT GHTSSNINTG  240
NGGSSSLNPD QWRHDLPGNG PPS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305784.11e-152hypothetical protein POPTR_0004s04590g
TrEMBLB9H2S71e-152B9H2S7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s04590.11e-152(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-09Dof family protein